Metagenomics Workshop 2024 UTSC

INSTALLATION

  • Install
    • WSL
    • Installing FastQC on Linux
      • Update your system
      • Install FastQC
      • Verify the installation
    • Installing FastQC on macOS
      • Install Homebrew
      • Install FastQC
      • Verify the installation
    • Installing Bowtie2
      • Bowtie2 on Ubuntu/Linux
      • Bowtie2 on macOS
    • MEGAHIT (WSL)
    • MEGAHIT (Mac)
    • CONCOCT Installation
    • Prodigal Installation
    • Prokka Installation
    • eggNOG-mapper Installation
      • Requirements
      • Installation
      • Setup
      • Optional Tools
    • PhyloPhlAn3 Installation
    • Installing CheckM (WSL)
    • Installing CheckM (Mac)
    • HTSeq Installation
    • MetaBAT2
      • Installation
    • Samtools Installation

CODE & MATERIALS

  • Code & Materials
    • Obtaining Sequence Data
    • Trimming Sequence Data
    • Removing Host Contaminants
    • Samtools
    • Assembly (MEGAHIT)
    • MetaBAT2 (Binning)
    • CheckM (Completeness and Contamination)
    • Prodigal (Gene Prediction)
    • Prokka (Genome Annotation)
    • HTSeq (RNA-seq counting)

RESOURCES

  • Resources
  • Workshop Highlights
    • Workshop Poster
    • Participants & Feedback
  • Contact
Metagenomics Workshop 2024 UTSC
  • Search

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